libera/##covid-19/ Friday, 2020-12-25

LjL🎄🌠🎅 meanwhile, Have a Decent Christmas Central Europe (et al) 🎄🌠🎅00:00
darsieI think(!) heart disease or cancer here means you should have that level if you have heart disease or cancer.00:00
darsieDon't put any weight on that thought.00:00
darsieI have no clue.00:00
gigasu_shidai didn't realize this but meals are still served even on short flights in the US, so ppl take off their masks00:00
gigasu_shidakinda scary ljl00:01
LjLgigasu_shida, well for that matter a national flight in the US had a positively sick with COVID passenger on board, who died during the flight, infecting the person who gave him CPR (and perhaps others, that's the one i know about), and he knew it full well and so did his wife, but they simply had to lie on the form as there is no verification of any sort00:02
LjLthe good news about airplanes is that the cabin's entire air gets changed every 2-3 minutes00:02
gigasu_shidageez didn't hear about that 00:02
LjLi hear firework00:02
gigasu_shidai would actually want all the blowers turned on 00:03
gigasu_shidabecause it would probably force the virus to have to stay longer in the air before settling on something00:03
LjLwhy would you want the virus to stay in the air O.o00:04
LjLdon't get the wrong impression that masks make it somehow impossible for the virus to get breathed by you00:04
LjLmasks most likely help, but that's a different claim00:04
gigasu_shidabecause it would be more likely to land on any surface rather than more likely to land on lung tissue (?)00:05
LjLif the virus settles on something, well, that may be an issue, if you touch that something and then you touch your mouth, nose or eyes (you can't do the former if you are wearing a mask, right?) but anyway there's much less evidence of transmission through fomites than there is via aerosol (or droplets, whatever)00:06
LjLgigasu_shida, the virus doesn't infect you by landing on lung tissue00:06
LjLit infects your nose or throat, possibly eyes00:07
LjLit goes into the lungs later, if at all00:07
LjL(it's possible that mild or asymptomatic cases don't get lung involvement, at least some of them, but it's unknown since there's also some with demonstrated x-rays anomalies to the lung... anyway, the main point being, it usually infects your upper airways first)00:07
BrainstormNew from r/WorldNews: worldnews: Boats, planes, helicopters: Canada gears up to vaccinate remote indigenous communities → https://is.gd/qjI1EX00:08
gigasu_shidaoh interesting ljl i didn't know that00:09
LjLgigasu_shida, that's why they put a swab in your nose and throat, and only if they have inconclusive results they use the longer probe that goes into your lungs00:10
gigasu_shidai see00:10
LjLgigasu_shida, that was a joke, there is no lung probe00:11
LjLi thought i would scare you but "i see" works too00:11
gigasu_shidahah. i thought they swabbed the nose because after the virus multiplies it reaches all tissue00:12
LjLnope, it might not be in blood, for one thing00:12
LjLi think being in blood is associated with uh-oh outcomes00:12
gigasu_shidaif you had said proboscis it would have scared me lol00:12
LjLwell i had a stomach endoscopy once where they were supposed to put me asleep but that kinda didn't work00:13
gigasu_shidaso that's interesting. you can be infected by the virus and it doesn't reach the blood serum00:13
LjLgigasu_shida, afaik... it's studies i recall from a while ago and my memory isn't great, as a disclaimer00:14
gigasu_shidaare you one of those rare ppl that are somewhat insensitive to anesthesia drugs?00:14
LjLgigasu_shida, probably not, although i never had surgery so i can't be sure - but they don't use actual anesthesia for those things, they sedate you with a shot of benzodiazepines and/or opiates (in my case, both)00:14
LjLi think the thing is that i kinda already use benzodiazepines ;(00:15
LjLso when i got the shot i felt just a vague sense of my vision "zooming out" for a moment00:15
LjLbut then i continued to be fully awake and aware00:15
LjLbenzodiazepines cause amnesia so the idea is that even if you aren't fully asleep, you won't remember the unpleasantness00:16
LjLbut apparently my memory is only terrible for the things i *want* to remember :\00:16
gigasu_shidaoh yeah, i was just studying that. ppl can largely different doses of drugs if they are already using them and tolerating their effects00:16
gigasu_shidappl can need*00:16
LjLwell, no one asked me00:16
LjLor if they did, they didn't care00:16
LjLi don't remember if they asked me :P00:16
LjLit wasn't a place that looked GREAT with people who seemed GREAT, to be fair00:17
gigasu_shidawas getting stomach-probed a bad experience ?00:17
LjLafter i was done and sitting down "recovering" (actually fully aware), they were saying bad things about this (asleep) woman with burqa and her husband who brought her there00:17
LjLat some point i was like ok, i think you shouldn't say this and this00:17
LjLbut i bit my tongue and mostly managed not to have an actual argument... maybe i should get more opiates at other times too? :P00:18
gigasu_shidalol00:18
LjLgigasu_shida, yes it was quite utterly unpleasant00:18
LjLwouldn't recommend00:18
LjLbut if you have to do it, it's not exactly traumatizing for life, either. just... bad.00:18
gigasu_shidawas it mainly the probe riding the wall of your throat that was annoying?00:19
LjLplus chances are you'd actually be put to sleep!00:19
LjLyes00:19
LjLthe gag reflex00:19
gigasu_shidayeah that's what i figured00:19
LjLand also, it's probably minor, but i had a sample taken00:19
LjLjust a very tiny sample of the stomach lining00:19
LjLthere are like tiny pliers at the end of the probe00:20
gigasu_shidathey can't biopsy you from the torso?00:20
gigasu_shidalike just stick a needle in your torso?00:20
LjLdon't think so, not without pretty major surgery-like stuff anyway00:20
LjLsticking a needle that goes past your stomach lining would be problematic00:20
gigasu_shidaintersting. a lot of organs can be biopsied that way00:20
LjLanyway if you're already having an endoscopy, that's just the easiest way00:20
gigasu_shidayeah i wouldn't want my stomach lining messed with as it's pretty thick00:21
gigasu_shidathere's a reason it's pretty thick00:21
LjLand it's not painful or anything buuuuut you *feel* it00:21
LjLit feels like a very very light pinch. except, inside of your stomach.00:21
LjLthe gag reflex from the probe is worse, but that part is just a little cringey00:22
gigasu_shidai figured you wouldn't feel much00:22
gigasu_shidai was wrong00:22
BrainstormUpdates for Colombia: +14940 cases (now 1.6 million), +280 deaths (now 41454) since a day ago — Netherlands: +11310 cases (now 732570) since 23 hours ago — Switzerland: +31 deaths (now 7098) since 9 hours ago00:22
LjLgigasu_shida, you don't feel much. it's like a *light* pinch as i said, nothing major, no actual pain. but the sensation of something pinching the inside of your stomach is... well, you may be the type of person who's just like "why's that an issue? it wasn't painful at all", or you may be the type who goes a bit "eeeek"00:24
gigasu_shidai'm surprised you take benzodiazepine00:25
gigasu_shidadoes that have any long term negative effects?00:25
gigasu_shidanevermind00:31
gigasu_shidamemory effects =/00:32
LjLgigasu_shida, yes plus they become less effective over time, you can have withdrawal when you stop taking them, which in turn means you can become addicted00:34
LjLbasically all the bad things of illegal drugs without many of the good things, except that they're legal (as long as prescribed)00:34
gigasu_shidatry to wean yourself off those man00:34
LjLwhy are you surprised? do i somehow emanate the impression of a calm, relaxed and balanced person? because that would be, uhm, inaccurate00:34
LjLde-facto, i'm not imagining it right, the thing where SARS-COV-2 is not found in the blood of many people and is usually a marker of a severe case?00:38
LjLi really wish we could just sloppily call the virus COVID because SARS-CoV-2 is extremely uncomfortable to type00:38
elchupacabra420[Of cause you cant be addicted  by legal drugs ;)00:43
gigasu_shidai'm not surprised actually, a lot of ppl take drugs these days00:44
elchupacabra420[Its nearly impossible to name one actually.00:45
CoronaBot04/r/coronavirus: 'It's So Much Worse Than Before.' Dread And Despair Haunt Nurses Inside LA's ICUs (10026 votes) | https://www.npr.org/sections/health-shots/2020/12/24/945027680/its-so-much-worse-than-before-dread-and-despair-haunt-nurses-inside-las-icus | https://redd.it/kjf49a01:01
BrainstormUpdates for Panama: +3413 cases (now 223674), +51 deaths (now 3715) since 17 hours ago — Lebanon: +2708 cases (now 165933), +20 deaths (now 1353) since a day ago — Uruguay: +747 cases (now 15457), +7 deaths (now 135) since 23 hours ago — Cuba: +217 cases (now 10717) since a day ago01:12
Haley[m]%cases france01:30
BrainstormHaley[m]: In France, there have been 2.5 million confirmed cases (3.8% of the population) and 62268 deaths (2.5% of cases) as of an hour ago. 32.4 million tests were performed (7.8% positive). See https://offloop.net/covid19/?default=France for time series data.01:30
de-facto✧☆★ Fröhliche Weihnachten ★☆✧01:44
LjLauch dir!01:46
de-factoDanke :)01:46
de-factoCheers :))01:47
BrainstormNew from https://covid19.specops.network : ljl-covid: Note that covidvax.news is currently unavailable → https://is.gd/DnvzG401:48
gigasu_shidaLjL: the EMT that gave CPR to that guy on the airplane who had covid (and died) has since "developed a cough and other COVID-19 symptoms, but he tested negative on Tuesday". what the hell is up with these tests. this guy HAS to be positive02:04
LjLgigasu_shida, hmm, still, i'd expect someone in that situation, with news attention on them, to get tested more than once if a false negative is suspected02:06
gigasu_shidayeah he should get tested several times over the course of 2-3 days02:06
BrainstormUpdates for Barbados: +16 cases (now 345) since a day ago02:08
de-facto"tested" also depends on the test, remember Elon Musk nagging about his antigen-quicktests alternating between positive and negative, so its always a question of time and thresholds for sensitivity (for false negatives) and specificity (false positives) 02:09
LjLde-facto, but we're talking about a flight attendant who gave CPR to someone who died02:18
de-factobtw they have found the UK mutated variant of SARS-CoV-2 in one person in Germany too already02:18
LjLi would assume proper PCR testing02:18
de-facto.title https://www.dw.com/en/new-covid-variant-reaches-germany-from-uk/a-5605414002:18
Brainstormde-facto: From www.dw.com: New COVID variant reaches Germany from UK | News | DW | 24.12.202002:18
LjLyeah02:18
LjLbut it was someone coming back from the UK, right?02:18
de-factoyeah i think so02:18
LjLin italy they already found a couple of people with no known connection to the UK :\02:18
LjLbut that's probably the tip of the iceberg02:19
de-facto"The woman, who flew to Germany to visit relatives, was picked up from the airport by relatives and has isolated at the family's home in Baden-Wuerttemberg since then, the state's health ministry said."02:19
de-factoisolation at family's home, what could possibly go wrong with that?02:19
LjLcountries that have kept their numbers low have actual quarantine facilities, generally02:19
LjLi'm not sure that's a coincidence02:20
de-factoindeed02:20
de-factothey should have booked her a luxurious hotel room for quarantine02:20
de-factoand make sure she stays in htere02:20
de-factobut oh well, as you say its probably just the tip of the iceberg02:21
de-factoalso i am sure noone else from that flight was quarantines when tested negative02:22
de-factoand tests always would come up negative directly after infection... so hmm.02:22
de-factothey stick to the protocol like robots02:23
de-factoimho they should make quarantine 14 days mandatory after flights, no matter what the test results say02:25
CoronaBot04/r/covid19: U.K. variant puts spotlight on immunocompromised patients’ role in the COVID-19 pandemic (86 votes) | https://www.sciencemag.org/news/2020/12/uk-variant-puts-spotlight-immunocompromised-patients-role-covid-19-pandemic | https://redd.it/kjllam02:25
de-factosupermutant factories?02:26
de-factomaybe if slow immune response in immunocompromised patients give SARS-CoV-2 enough time to bruteforce evading mutants this would be similar to a slow vaccination campaign in a population allowing the pathogen to spread in a half vaccinated population hence get used to deal with the immunity by the antibodies?02:30
de-factohopefully not...02:30
BrainstormUpdates for Canada: +6877 cases (now 536008), +121 deaths (now 14724) since 22 hours ago02:33
de-factoideally we would have a synchronized ultra-hard lockdown worldwide while accumulating vaccine doses then only after incidence went down to very low levels vaccinate everyone in record time to give the virus no time for bruteforcing escape mutants02:34
de-factounfortunately unrealistic, obviously we do the exact opposite, start very slowly with vaccination in high prevalence regions to maximize the probability of the pathogen to encounter vaccinated immunity as often as possible and also spread vaccinations slowly over long time to ensure it got enough tires to infect vaccinated02:36
de-facto*enough tries to infect vaccinated 02:37
BrainstormNew from r/WorldNews: worldnews: Germans spread Christmas charity despite coronavirus: Germany has experienced second wave of COVID-19 with Christmas approaching, but it doesn’t seem to be diminishing people’s willingness to donate to charity. In 2020 private donations set to reach record levels. → https://is.gd/qKICmx02:37
LjLde-facto, they should also sequence MUCH more, i don't think it's fair to have penalized the UK so much when in all likelihood, they were just the only one *testing* for mutations, and so, unsurprisingly, finding them02:38
LjLmaybe next time they won't even share what they find, if that results in freight blockage for two days02:39
de-factoyes thats a very good point, i think the same02:41
de-factoe.g. 1% of testing capacity for representative random sampling and idk 0.1% randomly sampled from positives to do full sequences from and publish them on regular basis to a worldwide collection to track mutations02:43
de-factolike mandatory for every country buying the RT-PCR and sequencing equipment02:44
LjLde-facto, 0.1% is already more or less what we do i think (well, a bit more), wasn't it like 0.4 out of 1000 for italy? but for the UK, it was 55?02:48
LjLor was that out of 10k02:48
de-factoanother idea: when the virus infects susceptible with naive immune system (hence no antibodies) there is no selection for initial replication in the upper respiratory tract (e.g. by highly specific IgG antibodies) so during the initial time of viral shedding it would do so without selecting for evading mutants, only with longer time when antibodies are raised such selection would happen but by then such carriers are not considered 02:51
de-factoinfectious to their direct proximity anymore02:51
de-factonow that would change as soon as a significant part of a population carries such highly specific igG antibodies because then selection for excape mutants would begin directly in the upper respiratory tract already02:52
de-factohence i think it is to be expected that with time we will see more and more evading mutants occurring (because of raising prevalence of immunity either by recovery or by vaccinations)02:53
de-factodoes not even have to be black and white, maybe someone only got low immunity and maybe a variant only got partial evading capabilities02:54
de-factoalso with fading immunity from the first wave reinfection probability raises, hence allowing the pathogen to replicate and select in a partial immune carrier02:58
de-factoso thats another contribution then02:59
LjLde-facto, i had a discussion about this earlier today with someone else... i'm not sure i understand the dynamics03:00
LjLde-facto, https://paste.ee/p/3CZIL03:01
de-factoyeah mutations occur randomly and such variants would infect susceptible the selection would only come from preexisting immunity. but what if bruteforcing could happen in the same host (both virus mutating and antibodies present at same time) like for those immunocompromised individuals or recovered from first wave with fading immunity? then selection for those random mutations would be much much more effective03:08
BrainstormUpdates for South Korea: +1237 cases (now 54770), +17 deaths (now 773) since 22 hours ago — Burkina Faso: +292 cases (now 5941) since a day ago — Netherlands: +11261 cases (now 735118), +93 deaths (now 10848) since 22 hours ago03:10
de-factoor vaccination slowly happening in a population with high infection incidence like the wild type could infect partially immune individuals03:11
LjLde-facto, well, one of the hypotheses for the many hitherto-unseen mutations in the UK variant i think was that it occurred in one immunocompromised individual who had a long infection03:12
de-factoyeah exactly03:12
de-factoit would make sense, the virus and partial (non neutralizing) immunity present in the same host allowing each virus mutation to try to evade that partial immunity03:13
de-factothat mechanism on a cellular level would allow for many more "tries" than for a randomly occurring mutation from a immuno-naive infected carrier being transmitted to someone with immunity that only neutralizes previous variants, hence selects such an escape mutant03:15
LjLbut what about the vaccine? i'm really not sure if an otherwise neutral mutation is more likely to persist when the bulk of the population is vaccinated if it's a vaccine-evading mutation, compared to when there is no vaccine around. as someone_else said, if the variant does arise, it will probably stick around whether or not a vaccine does03:16
LjLunless you give the vaccine to an immunocompromised individual i guess, then the process you describe could take place... only with a vaccine-evading mutation :\03:17
de-factoa vaccine evading mutation probably would have changed the S-protein significant enough that antibodies could not neutralize it, if that also means the price for that would be less efficient binding to ACE2 hence a replication disadvantage in a fully naive population in race with the previous wild type without that mutation?03:19
LjLi didn't even have enough limoncello as my usual daily ration :(03:19
LjLde-facto, right, that's what i said: if you have a *neutral* (in other ways) vaccine-evading mutation, then it may arise whether or not the vaccine is around; but if to evade the vaccine, it has to suffer some other selective disadvantage, then it will only stay around if most people are vaccinated03:20
LjLbut then also what do you think about what could happen if you gave the vaccine to an immunocompromised individual (which will probably happen)?03:21
LjLi think their body may give the virus just enough pressure to mutate to evade the vaccine, since it may not kill it off immediately03:21
de-factobut that happens anyhow already? like when there is IgG and virus around at the same time03:22
de-factoe.g. someone with not enough B-cells or such03:23
LjLyes but that could make it evade random antibodies but not necessarily the vaccine03:23
LjLjust like with these UK and SA variants... they "think" they "probably" won't impact the vaccine03:23
LjLthey still have to check, because there are changes in the S protein after all03:23
de-factonot sure if it matters if those few B-cells learned how to make their antibodies from the virus or from the vaccine when the virus is allowed to stay alive long enough in their body to bruteforce against those IgG antibodies with mutating replications03:24
de-factoyes those 69/70 deletions in the S-protein sequence of the RNA for example03:25
de-factoi just think we should do everything to minimize the "surface area" between virus and IgG immunity both in space and time to minimize its chance to bruteforce evading mutants03:27
BrainstormNew from The Indian Express: coronavirus outbreak: Germany reports first case of coronavirus variant spreading in Britain → https://is.gd/JvbDYe03:28
LjLi still think that, as crazy as it sounds, the only way to produce a "vaccine" at the required scale to adapt to the changes in the virus is to make an infectious vaccine... i.e. a virus, ideally one with no severe effects, but which generates immunity03:28
LjLotherwise, we'll keep having new evading mutations, and sure it will take 6 weeks to develop an mRNA vaccine to address them, but then it's more like 6 *years* to give it to 8 billion people03:29
LjLlast time i said this ryouma went mad at me, but, since i managed to make him leave together with tinwhiskers, i guess i can say it again :\03:30
de-facto[m]Hmm yeah attenuated wild type, stesl something essential from it to  help it go very weak yet raise immunity against its evil brother, but would that evolve the same way then ?03:36
de-facto[m]Im gonna have to call it a night i barely can keep my eyes open03:38
LjLde-facto[m], night03:59
kara[m]just heard about the new strain, is it a problem? or is it like the other new strains (where nothing changes really)?04:01
CoronaBot04/r/coronavirus: Colorado’s two In-N-Out locations declared COVID-19 outbreaks as 80 employees test positive (10096 votes) | https://www.denverpost.com/2020/12/24/in-n-out-burger-covid-outbreaks-colorado/ | https://redd.it/kjonk404:14
jimmyjammerhello04:24
kara[m]a new coronavirus variant is more transmissible not peer reviewed04:38
DocScrutinizer05what means >>to bruteforce against those IgG antibodies<< ?04:40
DocScrutinizer05kara[m]: yes, many indications that is an alleged "70%" more transmissible04:45
kara[m]thxs05:01
DocScrutinizer05LjL: I don't get the concept of your "vaccination virus pandemic". Seems like the recent sars-cov2 took about a year do get to <<5% of population. How would you want to speed that up, even if you were able to develop a virus that is same selectivity on cells and same immune response but without any of the severe damaging effects?05:08
DocScrutinizer05and note the *IF* in there05:10
DocScrutinizer05since much of the severe damaging effects _are_ from the immune response05:21
BrainstormNew from r/WorldNews: worldnews: East China reports COVID-19 re-infection case → https://is.gd/w8XLJV05:32
BrainstormUpdates for Belgium: +2583 cases (now 634904), +99 deaths (now 19038) since 22 hours ago05:45
BrainstormNew from r/WorldNews: worldnews: The Moderna Vaccine’s Antibodies May Not Last As Long As We Hoped → https://is.gd/SXdHEn05:56
BrainstormNew from The Indian Express: World: Trump golfs in Florida as COVID relief hangs in the balance → https://is.gd/9VP4IW06:34
BrainstormNew from The Indian Express: World: More than 600,000 people in UK get first Pfizer Covid-19 vaccine dose → https://is.gd/A0yjtU06:59
BrainstormUpdates for Florida, United States: +13147 cases (now 1.2 million), +121 deaths (now 20995) since 23 hours ago — New York, United States: +12568 cases (now 891270), +152 deaths (now 37028) since 23 hours ago — Rio Grande do Norte, Brazil: +11340 cases (now 539408), +63 deaths (now 11321) since 23 hours ago [... want %more?]07:18
DocScrutinizer05*sigh* >>This suggests that in these age groups, the duration of neutralizing antibodies from the Moderna vaccine will be relatively short, potentially less than a year. That is particularly troubling as these are the age groups most affected by severe Covid-19. It may well be that the levels of antibodies after three months, if maintained, are sufficient to protect these age groups, but it is unlikely they will continue to protect if 08:18
DocScrutinizer05levels fall still further<<08:18
BrainstormNew from r/WorldNews: worldnews: Leaked Documents Show How China’s Army of Paid Internet Trolls Helped Censor the Coronavirus → https://is.gd/4jbCOR08:24
BrainstormNew from r/Coronavirus: Daily Discussion Thread | December 25, 2020: The WHO pages contain up-to-date and global information. Please refer to our Wiki for additional information. → https://is.gd/m0gsN009:02
DocScrutinizer05anyone in china: does https://www.propublica.org/article/leaked-documents-show-how-chinas-army-of-paid-internet-trolls-helped-censor-the-coronavirus make it through the great firewall?09:14
BrainstormNew from NPR: U.S. Now Requires All U.K. Travelers To Have A Negative Coronavirus Test: The Centers for Disease Control and Prevention issued a new testing mandate for U.K. travelers coming into the U.S. after an outbreak of a new coronavirus variant in England. → https://is.gd/OCHox609:39
BrainstormNew from The Indian Express: World: 2020 in climate: As the world took the pandemic heat, global warming only became worse → https://is.gd/W8Ls2e09:52
BrainstormNew from The Indian Express: World: Mike Pompeo’s wife tested positive for coronavirus as cases spiked → https://is.gd/l0l3Rh10:04
BrainstormNew from r/WorldNews: worldnews: UK's biggest coronavirus testing lab hit by COVID-19 outbreak → https://is.gd/gXFJcY12:20
BrainstormNew from r/WorldNews: worldnews: Rich countries are hoarding vaccines: 51% of doses reserved by 15% of world's population → https://is.gd/SWEjTG12:32
BrainstormNew from Medical Xpress: S.Africa rejects claim its Covid variant more dangerous than UK strain: South Africa's health minister has rejected his British counterpart's claim that a new coronavirus variant in the country is more contagious or dangerous than a similar one in spreading the UK. → https://is.gd/ML0zvN13:10
BrainstormUpdates for Slovakia: +4046 cases (now 165608) since a day ago13:18
BrainstormNew from Medical Xpress: Morocco orders 65 million vaccine doses: Morocco said Thursday it had ordered 65 million doses of novel coronavirus vaccine, as the North African kingdom prepared to launch a vaccination campaign targeting 25 million people. → https://is.gd/22ih7v13:22
de-factoRKI Germany COVID-19 2020-12-25 (Xmess rep.): Weekly Incidence 188.8/100k, Infections +25533 (1612648 total), Fatalities +412 (29183 total), COVID@ICU 5372 (incl. 2847 on ventilator)13:39
de-factoWeekly Incidence over 500/100k in 7 districts in the federal state of Saxony, 1 district in fed. state Bavaria13:42
de-factoGenetic sequences of SARS-CoV-2 in Germany (Consultation laboratory for coronaviruses) https://civnb.info/sequences/ with sequences at https://civnb.info/germany/?c=city&r=city13:47
de-facto%title13:48
Brainstormde-facto: From civnb.info: Konsiliarlabor für Coronaviren13:48
de-factoDocScrutinizer05, ^^13:48
de-factointeresting, last entry is "EPI_ISL_412912|Europe-Germany-Baden-Wuerttemberg-unknown|2020-02-25"14:01
de-factopasting the last entry https://paste.gg/p/anonymous/5b3be1d143734ceba4d073cc00834908 into https://corona.bii.a-star.edu.sg/ 14:05
de-factoSeems to contain Mutations G71S@NSP5, P323L@NSP12, D614G@S, R203K@N, G204R@N when matching against hCoV-19/Wuhan/WIV04/201914:08
de-factohmm14:08
de-factomaybe its not the UK variant?14:11
genera"2020-02-25" ?14:12
de-factooh14:13
de-factolol thanks14:13
generanever trust a sequence that you didnt sequence yourself^^14:13
de-factoi am not fully awake yet, should have read the date properly14:13
de-factobut i like that they publish the full sequences14:14
de-factoyeah i thought because its the last entry, but its old14:16
de-factoguess we have to wait for it to be published?14:16
generathey maybe switched to another lab?14:18
de-factowhere was it detected in Frankfurt and then isolated at home in Stuttgart?14:19
de-factostill Charite should receive such sequences14:19
BrainstormNew from r/WorldNews: worldnews: Mutated COVID-19 strain confirmed in Japan as nationwide case tally hits record high. → https://is.gd/KE7nCY14:36
de-facto.title https://www.tagesschau.de/inland/coronavirus-mutation-105.html15:15
Brainstormde-facto: From www.tagesschau.de: Corona-Variante in Großbritannien: Virus-Mutation in Deutschland nachgewiesen | tagesschau.de15:15
de-facto.tr <de Bereits nach ihrer Landung in Frankfurt hatte die Betroffene einen Schnellltest gemacht, der positiv ausfiel. Anfang der Woche folgte ein PCR-Test, ebenfalls mit positivem Befund.15:15
Brainstormde-facto, German to English: After landing in Frankfurt, the person affected had already done a quicklest, which was positive. A PCR test followed at the beginning of the week, also with positive results. (MyMemory) [... want %more?]15:15
de-facto.tr <de Die Abstrichprobe sei an das zuständige Labor der Berliner Charité gesandt worden, hieß es vom Ministerium weiter.15:15
Brainstormde-facto, German to English: The ministry said the swab sample had been sent to the responsible laboratory at the Berlin Charité. (MyMemory, Google) — This *Abstrichprobe be at the responsible laboratory the #jelly donut *Charité sent #will, named it from the ministry on. (Apertium)15:15
de-facto.tr <de Die Untersuchung habe ergeben, dass es sich um die mutierte Corona-Variante B 1.1.7. handele. Die Frau habe bislang aber nur milde Krankheitssymptome entwickelt.15:15
Brainstormde-facto, German to English: The investigation showed that it was the mutated Corona variant B 1.1.7. act. So far, however, the woman has only developed mild symptoms. (MyMemory, Google) — The assay have made, that it #itself around this mutated *Corona-variation *B 1.1.7th act. The woman have up to the present but only mild *Krankheitssymptome evolved. (Apertium)15:16
de-factoSo it should be in the Data from Charite and they say its B 1.1.7 aka https://en.wikipedia.org/wiki/Variant_of_Concern_202012/0115:17
de-factohopefully its only this one case, as long as she isolates and does not cause a "foundation" cluster it should be contained ... hopefully15:19
de-factobegin of this week, hence the date for the sample should be like 2020-12-{21,22,23,..}15:21
de-factosomething like that15:22
BrainstormUpdates for Germany: +32349 cases (now 1.6 million) since 23 hours ago15:28
CoronaBot04/r/covid19: Information for Healthcare Professionals on Pfizer/BioNTech COVID-19 vaccine (80 votes) | https://www.gov.uk/government/publications/regulatory-approval-of-pfizer-biontech-vaccine-for-covid-19/information-for-healthcare-professionals-on-pfizerbiontech-covid-19-vaccine | https://redd.it/kjm1p415:36
de-facto.title https://www.tagesschau.de/ausland/coronavirus-variante-who-101.html15:46
Brainstormde-facto: From www.tagesschau.de: Corona-Impfstoff: Biontech erwartet Wirksamkeit bei Mutation | tagesschau.de15:46
de-facto.tr <de "Wir wissen, dass unser Impfstoff das Virus an vielen verschiedenen Stellen attackiert - dementsprechend sind wir zunächst einmal zuversichtlich, dass Immunantworten, die durch unseren Impfstoff bedingt werden, in der Lage sein könnten, auch dieses Virus zu neutralisieren", sagte Biontech-Chef Ugur Sahin im ARD extra.15:47
Brainstormde-facto, German to English: "We know that our vaccine attacks the virus in many different places - accordingly, we are initially confident that immune responses caused by our vaccine could be able to neutralize this virus," said Biontech boss Ugur Sahin on ARD extra. (MyMemory, Google) [... want %more?]15:47
de-facto.tr <de Das Virus sei jetzt etwas stärker mutiert, sagte Sahin der Deutschen Presse-Agentur. "Wir müssen das jetzt experimentell testen. Das wird etwa zwei Wochen in Anspruch nehmen. Wir sind aber zuversichtlich, dass der Wirkungsmechanismus dadurch nicht signifikant beeinträchtigt wird."15:47
Brainstormde-facto, German to English: The virus has now mutated a little stronger, said Sahin of the German press agency. "We now have to test it experimentally. It will take about two weeks. We are confident, however, that the mechanism of action will not be significantly impaired." (MyMemory) [... want %more?]15:47
de-facto.tr <de Das Antigen, das das Mainzer Unternehmen und sein US-Partner Pfizer für den Impfstoff nutzen, besteht laut Sahin aus über 1270 Aminosäuren. Davon seien jetzt neun mutiert, also noch nicht einmal ein Prozent.15:47
Brainstormde-facto, German to English: The antigen that the Mainz-based company and its US partner Pfizer use for the vaccine consists of over 1270 amino acids, according to Sahin. Nine of them have now mutated, so not even one percent. (MyMemory, Google) [... want %more?]15:48
de-facto.tr <de "Unser Impfstoff sieht das ganze Protein und bewirkt multiple Immunantworten. Dadurch haben wir so viele Andockstellen, dass das Virus schwer entkommen kann. Das bedeutet aber nicht, dass die neue Variante harmlos ist."15:48
Brainstormde-facto, German to English: "Our vaccine sees the whole protein and causes multiple immune responses. This gives us so many docking points that the virus is difficult to escape. But that doesn't mean the new variant is harmless." (MyMemory) [... want %more?]15:48
de-facto.tr <de Der Biontech-Impfstoff auf Basis des Botenmoleküls mRNA könne prinzipiell schnell an neue Varianten angepasst werden.15:48
Brainstormde-facto, German to English: The Biontech vaccine based on the messenger molecule mRNA can in principle be quickly adapted to new variants. (MyMemory, Google) — This *Biontech-serum at base the *Botenmoleküls *mRNA can always quickly at new variations adjusted will. (Apertium)15:48
Jigsy%cases UK15:53
BrainstormJigsy: In United Kingdom, there have been 2.2 million confirmed cases (3.3% of the population) and 69678 deaths (3.2% of cases) as of 8 hours ago. 52.3 million tests were performed (4.2% positive). See https://offloop.net/covid19/?default=United%20Kingdom for time series data.15:53
de-facto.title https://www.pei.de/EN/newsroom/press-releases/year/2020/27-pei-releases-first-batches-comirnaty-german-european-markets.html;jsessionid=707A990DF5379D859D1A306D7D277EF9.intranet24115:53
Brainstormde-facto: From www.pei.de: Paul-Ehrlich-Institut - Press Releases - Paul-Ehrlich-Institut Releases First Batches of BioNTech/Pfizer's COVID-19 Vaccine Comirnaty for German and European Markets15:53
de-facto"The Paul-Ehrlich-Institut, Federal Institute for Vaccines and Biomedicines, issued in function as European Official Medicines Control Laboratory (OMCL) EU batch release certificates for three batches of BioNTech/Pfizer's Comirnaty vaccine on 22 December 2020. The three batches contain approximately 4.1 million vaccine doses. Also on 22 December 2020, the Paul-Ehrlich-Institut issued the national batch release of the vaccine for Germany."15:54
de-factofrom tageschau link above15:56
de-facto"Germany should get the first delivery on Saturday. 151,125 vaccination doses are expected, announced the Berlin Senate Administration, which is currently chairing the state health ministerial conference."15:56
de-facto"Health Minister Jens Spahn said on Twitter that by the end of this year a total of more than 1.3 million vaccine doses should be delivered to the federal states. Then at least another 670,000 cans would be added every week in January."15:56
de-factoafaik there are as many as 8M citizens among the high priority group hence for them Germany would need at least 16M doses15:58
de-factoso with 1.3M doses that would be like 8% of them, following 0.67M weekly in January hence ~4% of those initial 16M doses each week16:00
JigsyHeh.16:01
JigsyNow the UK is considering dropping down to one vaccine per person.16:01
de-factohence if not ramped up faster around ~22 weeks for those 14.7M = 16M - 1.3M doses with begin of January it would take until 2021-06-0416:03
de-factoJigsy, why not seems to protect already very early https://www.nejm.org/doi/full/10.1056/NEJMoa203457716:04
de-factoFigure 3 https://www.nejm.org/na101/home/literatum/publisher/mms/journals/content/nejm/0/nejm.ahead-of-print/nejmoa2034577/20201217/images/img_xlarge/nejmoa2034577_f3.jpeg16:04
de-facto"Between the first dose and the second dose, 39 cases in the BNT162b2 group and 82 cases in the placebo group were observed, resulting in a vaccine efficacy of 52% (95% CI, 29.5 to 68.4) during this interval and indicating early protection by the vaccine, starting as soon as 12 days after the first dose."16:06
de-factoof course they should receive a second dose, but protection starts already as early as 12 days after the first dose according to that graph there16:08
BrainstormUpdates for Switzerland: +33 deaths (now 7131) since 15 hours ago16:18
BrainstormNew from r/WorldNews: worldnews: Pope Francis to the Rich: Don’t Hoard COVID-19 Vaccines → https://is.gd/BwSd5416:42
CoronaBot04/r/covid19: Introduction into the Marseille geographical area of a mild SARS-CoV-2 variant originating from sub-Saharan Africa (80 votes) | https://www.medrxiv.org/content/10.1101/2020.12.23.20248758v1 | https://redd.it/kjymrt16:49
BrainstormUpdates for United Kingdom: +36969 cases (now 2.2 million), +573 deaths (now 69851) since 22 hours ago — Netherlands: +11299 cases (now 743869), +95 deaths (now 10921) since 17 hours ago17:32
KREYRENdoes anyone by chance knows the incubation temperature for grapthemys pseudographica kohni (Missisippi map turtle)?17:33
BrainstormNew from r/WorldNews: worldnews: Pope Francis in Christmas message calls for COVID-19 vaccines for everyone → https://is.gd/DI51CA17:33
blkshpOh No :( Good luck!17:43
BrainstormNew from r/Coronavirus: Coronavirus: Pope slams anti-mask protesters for being stuck in 'their own little world of interests' → https://is.gd/HK9UGY17:59
BrainstormNew from Reddit (test): Friday 25 December Update: submitted by /u/HippolasCage to r/CoronavirusUK → https://is.gd/xnhQjd18:24
BrainstormNew from r/WorldNews: worldnews: Coronavirus: Saint Nicholas nursing home visit results in death of 18 residents → https://is.gd/HwIMwE19:02
BrainstormNew from Reddit (test): CoronaVirus_2019_nCoV: Overworked Japanese nurses quitting as they face discrimination from neighbours over Covid → https://is.gd/cteY6819:39
CoronaBot04/r/coronavirus: Pope slams anti-mask protesters for being stuck in 'their own little world of interests' (10908 votes) | https://www.irishpost.com/news/pope-slams-anti-mask-protesters-opposed-to-covid-restrictions-for-being-stuck-in-their-own-little-world-of-interests-198624 | https://redd.it/kk12je19:44
BrainstormUpdates for France: +246 deaths (now 62361) since 23 hours ago — Switzerland: +61 deaths (now 7159) since 19 hours ago20:07
BrainstormNew from Medical Xpress: Turkey to require negative COVID-19 test result for travel: Turkey is enacting precautions for international travel, requiring a negative COVID-19 test for passengers to enter the country starting Monday until March. → https://is.gd/9LB7I020:17
CoronaBot04/r/covid19: NO EVIDENCE THAT 501.V2 VARIANT IS MORE DANGEROUS THAN UK VARIANT (84 votes) | https://www.nicd.ac.za/no-evidence-that-501-v2-variant-is-more-dangerous-than-uk-variant/ | https://redd.it/kk1z5s20:20
LjLOKAY I AM RELIEVED20:29
LjLoh, it's about the South Africa variant not being worse than the UK variant20:30
LjLnot about both of them not being worse than the baseline ;(20:30
BrainstormUpdates for Italy: +19037 cases (now 2.0 million), +459 deaths (now 71359) since a day ago20:38
ubLIX[m]no evidence on dangerous of thing compared to thing about which there is no evidence on dangerousness?20:52
LjLDocScrutinizer05, yeah maybe you're right, it would be tricky to engineer a virus like that20:52
ubLIX[m]..and the 2020 Award for Valuable Journalism goes to.. idk, i didn't actually click the link20:53
LjLubLIX[m], well i disagree that there is no evidence of dangerousness about either of them... i mean, yeah, there is tentative evidence they spread easier, but if that's true, that basically turns into augmented danger (of catching it, and over overloading resources)20:53
ubLIX[m]well, quite20:54
LjLi've seen the Vincent Racaniello video where he maintains there is no evidence, i have seen other such opinions too... but... i think even if at a very strict scientific level there is no *conclusive* evidence, the hints are enough that, politically, it should be treated as more infectious20:54
LjLthere are varying levels of evidence... if you see a new variant, and where that new variant is found, you also see a ginormous scary spike... you better treat it as the cause of it, even if you can't prove it from epidemiological data alone20:55
LjLalthough he has a point when he says that with D614G (which by now was a while ago), stricter infectiousness tests weren't done20:55
LjLwhy weren't they done? yes, i understand you need a level 3 lab20:55
LjLbut even if you deem circumstantial evidence as sufficient for lockdowns, stops to flights, etc... you are kinda still supposed to investigate it further in the meanwhile20:56
ubLIX[m]yes but i suppose the dwelling on dangerousness here is concerned with severity of clinical course rather than infectiousness, even though infectiousness constitutes a danger in itself20:56
LjLand since it's a variant that circulates worldwide, surely there should be *some* level 3 lab available to study it20:56
ubLIX[m]there is no evidence the new variants are not being studied in labs around the world20:57
LjLubLIX[m], for the new ones, sure, but as i said D614G has been around for a long time now, and considered potentially important, so if they're still busy studying it, it wouldn't hurt if they released a preliminary paper or something20:58
LjLubLIX[m], i suspect that SA press conference may not even really be thinking about the difference, and they're implicitly saying there is no evidence of *more infectiousness* for the SA variant compared to the UK variant either20:58
LjL"We are also concerned that there is rhetoric developing that the 501.V2 variant is more transmissible than the the UK variant or may potentially cause more serious morbidity and mortality." ← they conflate all those things20:58
ubLIX[m]my mind is trapped right now on the idea that "No evidence.. " someways needs to make it onto a t-shirt emblematic of 202021:01
LjLthere are shades of gray between "no evidence" and "all possible evidence"21:02
LjLi have a laser printer but i'd have to research how to transfer to t-shirts :P21:03
BrainstormNew from BBC Health: (news): Covid: Post-exposure antibody protection trialled → https://is.gd/m16ExA21:07
DocScrutinizer05absence of evidence is not evidence of absence21:25
BrainstormNew from r/WorldNews: worldnews: COVID-19 will be 'with us for the next 10 years', warns vaccine chief → https://is.gd/b8On8W22:08
BrainstormNew from r/WorldNews: worldnews: Saudi crown prince gets his first dose of COVID-19 vaccine → https://is.gd/df9mYp22:45
BrainstormUpdates for South Africa: +14796 cases (now 983359), +293 deaths (now 26276) since 23 hours ago22:48
BrainstormNew from r/WorldNews: worldnews: In Christmas message curbed by COVID, pope calls on nations to share vaccines → https://is.gd/UXLj1W23:22

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